.. MetaDIVE documentation master file, created by
   sphinx-quickstart on Tue Mar 25 11:49:26 2025.

Welcome to MetaDIVE's documentation!
====================================

.. image:: images/MetaDive_image_idea_June_2024.png
   :alt: MetaDIVE logo
   :width: 400px
   :align: center

**MetaDIVE** is a metagenomics analysis pipeline which specialises in the high accuracy and low false negative detection.
of both **known** and highly **novel** viruses. MetaDIVE can be run in several ways depending on the modules chosen and 
the key goals of your project. 

.. toctree::
   :maxdepth: 2

   Overview



.. toctree::
   :maxdepth: 3

   Installation_guide
   Run_setup
   
.. toctree::
   :maxdepth: 2

   Results

.. toctree::
   :maxdepth: 3

   Desc_envs
   Desc_databases
   Desc_scripts
   Desc_rules
   Troubleshooting
   References
   

.. note::

   This project is under active development